Illumina Sequencers vs MGI DNBSEQ-T7 comparison using KOREF

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문서 역사

Comparative analysis of seven short-reads sequencing platforms using Korean Reference Genome (MGI vs Illumina)
 

Summary : We have compared seven sequencing platforms including
BGISEQ-500, DNBSEQ-T7(MGISEQ-T7), HiSeq2000, HiSeq2500, HiSeq4000, HiSeqX10, and NovaSeq6000.


Sequencing raw data
 

  Illumina sequencing platforms MGI sequencing platforms
  HiSeq2000 HiSeq2500 HiSeq4000 HiSeqX10 NovaSeq6000 BGISEQ-500 DNBSEQ-T7
Production date 2012 2015.03 2015.10 2015.12 2019.04 2017.04 2019.09
Quality range Illumina 1.5+ Illumina 1.8+ Illumina 1.8+ Illumina 1.8+ Illumina 1.8+ Illumina 1.8+ Illumina 1.8+
  1. of Total read
 1,044M 1,500M 629M 833M 833M 1,171M 1,035M
Read length (bp) 90 PE 101 PE 151 PE 151 PE 151 PE 100 PE 100 PE
Total bases 94 Gb 151.5 Gb 95 Gb 125.8 Gb 125.8 Gb 117.1 Gb 103.4 Gb
Sequencing depth (×, based on 3 Gb) 31.31 50.52 31.65 41.94 41.94 39.04 34.49
Download link Raw data link

Variant calling format (VCF) file

Platform VCF file download link
HiSeq2000 VCF file
HiSeq2500 VCF file
HiSeq4000 VCF file
HiSeqX10 VCF file
NovaSeq6000 VCF file
BGISEQ-500 VCF file
DNBSEQ-T7 VCF file

Illumina Omni1-Quad SNP chip raw data
SNP chip raw data